Variant report
| Variant | rs7036767 |
|---|---|
| Chromosome Location | chr9:93301922-93301923 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10121938 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10123097 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10512200 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10993558 | 0.88[EUR][1000 genomes] |
| rs10993559 | 0.88[EUR][1000 genomes] |
| rs10993560 | 0.88[EUR][1000 genomes] |
| rs10993561 | 0.88[EUR][1000 genomes] |
| rs10993562 | 0.88[EUR][1000 genomes] |
| rs10993571 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12338796 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12339278 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12339449 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12339490 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12340368 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12343716 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12349410 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12350452 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12351665 | 0.88[EUR][1000 genomes] |
| rs13440327 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17451922 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7021025 | 0.88[EUR][1000 genomes] |
| rs7025381 | 0.88[EUR][1000 genomes] |
| rs7042807 | 0.88[EUR][1000 genomes] |
| rs919105 | 0.88[EUR][1000 genomes] |
| rs970686 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv893565 | chr9:93130796-93392332 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv893566 | chr9:93209923-93439259 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93299200-93305400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr9:93300000-93308400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
