Variant report

Variant	rs10993562
Chromosome Location	chr9:93267779-93267780
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10121938	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10123097	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10512200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993555	0.88[AMR][1000 genomes]
rs10993558	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993559	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993560	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993571	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12338796	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12339278	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12339449	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339490	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12340368	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12343716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12349410	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12350452	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12351665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352999	0.86[AMR][1000 genomes]
rs12353086	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13440327	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17450776	0.83[AMR][1000 genomes]
rs17451922	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7021025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033803	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7033909	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7036767	0.88[EUR][1000 genomes]
rs7042807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970686	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893566	chr9:93209923-93439259	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93264400-93268000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:93264400-93268600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:93264600-93268400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:93265000-93268000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:93265000-93268000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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