Variant report

Variant	rs11000200
Chromosome Location	chr10:53696861-53696862
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11000189	0.96[ASN][1000 genomes]
rs11000193	0.96[ASN][1000 genomes]
rs11000203	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11000263	0.98[ASN][1000 genomes]
rs11000315	0.82[ASN][1000 genomes]
rs12411770	0.97[ASN][1000 genomes]
rs1903957	0.85[ASN][1000 genomes]
rs2339899	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879635	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093940	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53692600-53697600	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:53693200-53697000	Weak transcription	Fetal Lung	lung
3	chr10:53694800-53697000	Weak transcription	Aorta	Aorta
4	chr10:53695600-53697200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:53696200-53697200	Enhancers	NHDF-Ad	bronchial
6	chr10:53696400-53697000	Enhancers	NHLF	lung
7	chr10:53696800-53697000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:53696800-53697200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:53696800-53697200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:53696800-53697400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:53696800-53697400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:53696800-53697800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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