Variant report

Variant	rs7093940
Chromosome Location	chr10:53710220-53710221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11000189	0.96[ASN][1000 genomes]
rs11000193	0.96[ASN][1000 genomes]
rs11000200	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11000203	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11000263	0.98[ASN][1000 genomes]
rs11000315	0.82[ASN][1000 genomes]
rs12411770	0.97[ASN][1000 genomes]
rs1903957	0.85[ASN][1000 genomes]
rs2339899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879635	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7093940	DKK1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53707600-53713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:53709600-53710800	Enhancers	Colon Smooth Muscle	Colon
3	chr10:53710200-53710600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:53710200-53710600	Enhancers	Gastric	stomach
5	chr10:53710200-53710800	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:53710200-53710800	Enhancers	Ovary	ovary
7	chr10:53710200-53710800	Enhancers	Psoas Muscle	Psoas
8	chr10:53710200-53710800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:53710200-53710800	Enhancers	Right Atrium	heart
10	chr10:53710200-53711000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:53710200-53711000	Enhancers	Left Ventricle	heart
12	chr10:53710200-53711000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr10:53710200-53711000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr10:53710200-53711200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:53710200-53711800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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