Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11000189	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11000193	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11000200	0.98[ASN][1000 genomes]
rs11000203	0.98[ASN][1000 genomes]
rs11000315	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11000355	0.88[EUR][1000 genomes]
rs11000373	0.88[EUR][1000 genomes]
rs11000375	0.88[EUR][1000 genomes]
rs11000383	0.88[EUR][1000 genomes]
rs11000395	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11527417	0.88[EUR][1000 genomes]
rs12411770	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12414809	0.88[EUR][1000 genomes]
rs16925327	0.87[EUR][1000 genomes]
rs1903957	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1904043	0.88[EUR][1000 genomes]
rs2199585	0.88[EUR][1000 genomes]
rs2339899	0.98[ASN][1000 genomes]
rs2879635	0.97[ASN][1000 genomes]
rs60791951	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61847500	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7093940	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53707600-53713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:53710600-53713000	Weak transcription	Aorta	Aorta
3	chr10:53710800-53713200	Weak transcription	Ovary	ovary
4	chr10:53710800-53713400	Enhancers	Fetal Lung	lung
5	chr10:53711000-53714000	Weak transcription	Left Ventricle	heart
6	chr10:53711000-53720400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:53711200-53713800	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:53711400-53713200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr10:53711600-53713000	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:53711800-53713200	Enhancers	Colon Smooth Muscle	Colon
11	chr10:53712600-53713400	Enhancers	Fetal Stomach	stomach

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