Variant report
| Variant | rs1100225 |
|---|---|
| Chromosome Location | chr7:108529504-108529505 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr7:108529428-108529514 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| C7orf66 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10953586 | 0.84[ASN][1000 genomes] |
| rs10953587 | 0.84[ASN][1000 genomes] |
| rs10953588 | 0.84[ASN][1000 genomes] |
| rs11762097 | 0.92[ASN][1000 genomes] |
| rs11762975 | 0.92[ASN][1000 genomes] |
| rs11768230 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11768295 | 0.91[ASN][1000 genomes] |
| rs11768328 | 0.91[ASN][1000 genomes] |
| rs11769067 | 0.92[ASN][1000 genomes] |
| rs11770605 | 0.92[ASN][1000 genomes] |
| rs11771056 | 0.92[ASN][1000 genomes] |
| rs11771507 | 0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11773556 | 0.92[ASN][1000 genomes] |
| rs11773560 | 0.92[ASN][1000 genomes] |
| rs12667293 | 0.92[ASN][1000 genomes] |
| rs12668001 | 0.84[ASN][1000 genomes] |
| rs12668048 | 0.84[ASN][1000 genomes] |
| rs12672328 | 0.92[ASN][1000 genomes] |
| rs1404696 | 0.92[ASN][1000 genomes] |
| rs1404697 | 0.92[ASN][1000 genomes] |
| rs1404698 | 0.92[ASN][1000 genomes] |
| rs2189048 | 0.84[ASN][1000 genomes] |
| rs2189050 | 0.84[ASN][1000 genomes] |
| rs28687646 | 0.80[ASN][1000 genomes] |
| rs73422634 | 0.92[ASN][1000 genomes] |
| rs73422640 | 0.97[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73424667 | 0.91[ASN][1000 genomes] |
| rs7457714 | 0.83[ASN][1000 genomes] |
| rs7798473 | 0.84[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs848339 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs848353 | 1.00[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs848361 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817371 | chr7:108199882-108649799 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031096 | chr7:108334543-108596014 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
