Variant report

Variant	rs12668001
Chromosome Location	chr7:108625799-108625800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10953586	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953587	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953588	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1100225	0.84[ASN][1000 genomes]
rs11762097	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11762975	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11765006	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11768230	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11768295	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11768328	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11769067	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11770605	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771056	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771507	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11772759	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11773556	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11773560	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12667293	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12667868	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12668048	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670362	0.93[EUR][1000 genomes]
rs12672148	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672328	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1404696	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1404697	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1404698	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189048	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189050	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214337	0.86[AFR][1000 genomes]
rs28687646	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2894522	0.86[AFR][1000 genomes]
rs73422634	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73422640	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73424667	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7457714	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7798473	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs848339	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs848353	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs848361	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv888946	chr7:108592224-108644939	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv608075	chr7:108592224-108657719	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv824251	chr7:108595570-108643855	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757235	chr7:108595645-108660398	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2759551	chr7:108595645-108660398	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv888947	chr7:108596014-108644939	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv442060	chr7:108596015-108637601	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv888948	chr7:108601089-108644939	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108624200-108625800	Enhancers	Fetal Brain Male	brain
2	chr7:108624800-108636800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:108625000-108637200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:108625200-108628000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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