Variant report

Variant	rs12667293
Chromosome Location	chr7:108545728-108545729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10953586	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953587	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953588	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1100225	0.92[ASN][1000 genomes]
rs11762097	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11762975	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765006	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11768230	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11768295	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768328	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11769067	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771056	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771507	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11772759	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11773556	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12667868	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12668001	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668048	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12670362	0.93[EUR][1000 genomes]
rs12672148	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12672328	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404696	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404698	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189048	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189050	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28687646	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73422634	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73422640	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424667	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7457714	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7798473	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848339	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs848353	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848361	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108545400-108546000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:108545600-108545800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links