Variant report

Variant	rs848339
Chromosome Location	chr7:108561079-108561080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10953586	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953587	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953588	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1100225	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11762097	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11762975	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11765006	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11768230	0.95[ASN][1000 genomes]
rs11768295	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768328	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11770605	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11771056	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11771507	0.95[ASN][1000 genomes]
rs11772759	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11773556	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11773560	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667293	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667868	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12668001	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12668048	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12670362	0.85[EUR][1000 genomes]
rs12672148	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12672328	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1404696	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1404697	0.85[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1404698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2189048	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2189050	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28687646	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73422634	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73422640	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73424667	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7457714	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7798473	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs848340	0.81[AFR][1000 genomes]
rs848353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs848361	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs848390	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3448608	chr7:108561050-108585761	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108560800-108561400	ZNF genes & repeats	Dnd41	blood

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