Variant report
| Variant | rs848390 |
|---|---|
| Chromosome Location | chr7:108528518-108528519 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10953586 | 0.85[ASN][1000 genomes] |
| rs10953587 | 0.85[ASN][1000 genomes] |
| rs10953588 | 0.85[ASN][1000 genomes] |
| rs1100225 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11762097 | 0.93[ASN][1000 genomes] |
| rs11762975 | 0.93[ASN][1000 genomes] |
| rs11768230 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11768295 | 0.92[ASN][1000 genomes] |
| rs11768328 | 0.92[ASN][1000 genomes] |
| rs11769067 | 1.00[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs11770605 | 0.85[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs11771056 | 0.93[ASN][1000 genomes] |
| rs11771507 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11773556 | 0.93[ASN][1000 genomes] |
| rs11773560 | 0.93[ASN][1000 genomes] |
| rs12667293 | 0.93[ASN][1000 genomes] |
| rs12668001 | 0.85[ASN][1000 genomes] |
| rs12668048 | 0.85[ASN][1000 genomes] |
| rs12672328 | 0.93[ASN][1000 genomes] |
| rs1404696 | 0.85[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs1404697 | 0.85[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs1404698 | 1.00[CEU][hapmap];0.93[ASN][1000 genomes] |
| rs2189048 | 0.85[ASN][1000 genomes] |
| rs2189050 | 0.85[ASN][1000 genomes] |
| rs28687646 | 0.81[ASN][1000 genomes] |
| rs73422634 | 0.93[ASN][1000 genomes] |
| rs73422640 | 0.97[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs73424667 | 0.92[ASN][1000 genomes] |
| rs7457714 | 0.84[ASN][1000 genomes] |
| rs7798473 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs848339 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs848353 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs848361 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817371 | chr7:108199882-108649799 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031096 | chr7:108334543-108596014 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
