Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10733922	0.93[ASN][1000 genomes]
rs10824938	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10824939	0.97[ASN][1000 genomes]
rs10824940	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10824941	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10824942	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10824943	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10824944	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11003446	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11812249	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11814008	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1903918	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1903919	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1903920	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2086059	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2384165	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2384168	0.81[ASN][1000 genomes]
rs55654117	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7092616	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72787112	0.89[EUR][1000 genomes]
rs72787116	0.84[ASN][1000 genomes]
rs7922068	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54966000-54969600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:54966400-54981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:54968600-54968800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:54968600-54970800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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