Variant report

Variant	rs2384168
Chromosome Location	chr10:54953167-54953168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10824938	0.88[ASN][1000 genomes]
rs10824939	0.84[ASN][1000 genomes]
rs10824940	0.85[ASN][1000 genomes]
rs10824941	0.85[ASN][1000 genomes]
rs10824942	0.81[ASN][1000 genomes]
rs10824943	0.85[ASN][1000 genomes]
rs10824944	0.85[ASN][1000 genomes]
rs11003446	0.85[ASN][1000 genomes]
rs11003453	0.81[ASN][1000 genomes]
rs1903918	0.84[ASN][1000 genomes]
rs1903919	0.84[ASN][1000 genomes]
rs1903920	0.85[ASN][1000 genomes]
rs2086059	0.85[ASN][1000 genomes]
rs2384165	0.81[ASN][1000 genomes]
rs7092616	0.84[ASN][1000 genomes]
rs7922068	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv467203	chr10:54929003-54955296	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
4	nsv550927	chr10:54929003-54955296	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv1040274	chr10:54929854-54964636	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv971882	chr10:54934304-54967429	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54951600-54960800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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