Variant report

Variant	rs7922068
Chromosome Location	chr10:54991034-54991035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10733922	0.89[ASN][1000 genomes]
rs10824938	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10824939	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10824940	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10824941	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10824942	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10824943	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10824944	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10824951	0.94[EUR][1000 genomes]
rs11003446	0.81[ASN][1000 genomes]
rs11003453	0.85[ASN][1000 genomes]
rs11812249	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814008	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1903918	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1903919	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1903920	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2086059	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2384165	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2384168	0.81[AMR][1000 genomes]
rs55654117	0.91[ASN][1000 genomes]
rs7092616	0.86[ASN][1000 genomes]
rs72787112	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72787116	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72804159	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1054987	chr10:54976344-55097467	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2760139	chr10:54976356-55097479	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv515785	chr10:54981512-55093531	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54985200-55005200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links