Variant report

Variant	rs11013435
Chromosome Location	chr10:23680014-23680015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr10:23679649-23680112	SH-SY5Y	brain:	n/a	n/a
2	GATA3	chr10:23679698-23680143	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr10:23679743-23680166	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
MIR1254-2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10458696	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458697	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458698	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458699	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458700	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458701	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10458702	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10764401	0.89[EUR][1000 genomes]
rs10828438	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828439	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828442	0.85[EUR][1000 genomes]
rs10828443	0.85[EUR][1000 genomes]
rs10828444	0.85[EUR][1000 genomes]
rs10828445	0.85[EUR][1000 genomes]
rs10828446	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828447	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828448	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10828449	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013439	0.85[EUR][1000 genomes]
rs11013440	0.85[EUR][1000 genomes]
rs11013442	0.85[EUR][1000 genomes]
rs11013443	0.85[EUR][1000 genomes]
rs11013445	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013448	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013449	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013450	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013451	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013452	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013453	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013454	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013456	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1110308	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1110309	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11595979	0.92[EUR][1000 genomes]
rs11598035	0.85[EUR][1000 genomes]
rs11598831	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11817475	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11819219	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12049727	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12049728	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221155	0.81[EUR][1000 genomes]
rs12221365	1.00[CEU][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12573322	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1511827	0.83[EUR][1000 genomes]
rs2012456	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs34324518	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34842656	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35353501	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35634725	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6482272	0.88[ASN][1000 genomes]
rs68065182	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7076002	0.82[ASN][1000 genomes]
rs72648297	0.85[EUR][1000 genomes]
rs72648298	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72648299	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72648300	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72648301	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7900169	0.92[EUR][1000 genomes]
rs7916332	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs883850	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs883851	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23679600-23680800	Enhancers	Placenta	Placenta

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