Variant report

Variant	rs12049727
Chromosome Location	chr10:23682580-23682581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23681932..23683640-chr10:23685915..23688818,2	K562	blood:

Variant related genes	Relation type
ENSG00000238515	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10458696	0.92[EUR][1000 genomes]
rs10458697	0.92[EUR][1000 genomes]
rs10458698	0.92[EUR][1000 genomes]
rs10458699	0.92[EUR][1000 genomes]
rs10458700	0.92[EUR][1000 genomes]
rs10458701	0.92[EUR][1000 genomes]
rs10458702	0.92[EUR][1000 genomes]
rs10764401	0.90[EUR][1000 genomes]
rs10828438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828439	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828442	0.86[EUR][1000 genomes]
rs10828443	0.86[EUR][1000 genomes]
rs10828444	0.86[EUR][1000 genomes]
rs10828445	0.86[EUR][1000 genomes]
rs10828446	0.92[EUR][1000 genomes]
rs10828447	0.92[EUR][1000 genomes]
rs10828448	0.92[EUR][1000 genomes]
rs10828449	0.92[EUR][1000 genomes]
rs11013435	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013439	0.86[EUR][1000 genomes]
rs11013440	0.86[EUR][1000 genomes]
rs11013442	0.86[EUR][1000 genomes]
rs11013443	0.86[EUR][1000 genomes]
rs11013445	0.92[EUR][1000 genomes]
rs11013448	0.92[EUR][1000 genomes]
rs11013449	0.92[EUR][1000 genomes]
rs11013450	0.92[EUR][1000 genomes]
rs11013451	0.92[EUR][1000 genomes]
rs11013452	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013453	0.92[EUR][1000 genomes]
rs11013454	0.92[EUR][1000 genomes]
rs11013456	0.92[EUR][1000 genomes]
rs1110308	0.92[EUR][1000 genomes]
rs1110309	0.92[EUR][1000 genomes]
rs11595979	0.92[EUR][1000 genomes]
rs11598035	0.86[EUR][1000 genomes]
rs11598831	0.92[EUR][1000 genomes]
rs11817475	0.92[EUR][1000 genomes]
rs11819219	0.92[EUR][1000 genomes]
rs12049728	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221155	0.82[EUR][1000 genomes]
rs12221365	0.92[EUR][1000 genomes]
rs12573322	0.92[EUR][1000 genomes]
rs1511827	0.84[EUR][1000 genomes]
rs34324518	0.86[EUR][1000 genomes]
rs34842656	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35353501	0.84[EUR][1000 genomes]
rs35634725	0.92[EUR][1000 genomes]
rs6482272	0.89[ASN][1000 genomes]
rs68065182	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076002	0.83[ASN][1000 genomes]
rs72648297	0.86[EUR][1000 genomes]
rs72648298	0.92[EUR][1000 genomes]
rs72648299	0.92[EUR][1000 genomes]
rs72648300	0.88[EUR][1000 genomes]
rs72648301	0.92[EUR][1000 genomes]
rs7900169	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7916332	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883850	0.92[EUR][1000 genomes]
rs883851	0.92[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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