Variant report

Variant	rs11014310
Chromosome Location	chr10:25226032-25226033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25216805..25220140-chr10:25223845..25226604,5	K562	blood:
2	chr10:25012095..25013679-chr10:25224570..25227209,2	MCF-7	breast:
3	chr10:25217615..25220140-chr10:25224103..25226604,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1158057	1.00[AMR][1000 genomes]
rs12098488	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925204	1.00[AMR][1000 genomes]
rs16925206	1.00[AMR][1000 genomes]
rs16925213	1.00[AMR][1000 genomes]
rs16925221	1.00[AMR][1000 genomes]
rs16925231	1.00[AMR][1000 genomes]
rs34736361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3920009	1.00[AMR][1000 genomes]
rs7091416	1.00[AMR][1000 genomes]
rs7901799	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11014310	PRTFDC1	cis	lymphoblastoid	seeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:25210600-25233400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:25210600-25233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
7	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:25218600-25233400	Weak transcription	NHLF	lung
9	chr10:25218800-25236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:25219000-25227000	Weak transcription	Aorta	Aorta
11	chr10:25219000-25236600	Weak transcription	Ovary	ovary
12	chr10:25219200-25227200	Weak transcription	Brain Angular Gyrus	brain
13	chr10:25219200-25227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:25219200-25233600	Weak transcription	NHDF-Ad	bronchial
15	chr10:25219200-25240000	Weak transcription	Dnd41	blood
16	chr10:25219600-25227200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:25219600-25227400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:25219800-25233200	Weak transcription	A549	lung
19	chr10:25221400-25233800	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:25222800-25226200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:25223400-25226200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:25223400-25226200	Strong transcription	Fetal Lung	lung
23	chr10:25223400-25226400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:25223600-25233400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:25223800-25227400	Weak transcription	K562	blood
26	chr10:25224200-25226400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:25224200-25236400	Weak transcription	Brain Germinal Matrix	brain
28	chr10:25224400-25233400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:25224600-25236000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:25225000-25227400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:25225400-25233000	Weak transcription	Fetal Intestine Large	intestine
32	chr10:25225400-25240000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:25225400-25240000	Weak transcription	Fetal Brain Female	brain
34	chr10:25225600-25227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:25225600-25227200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:25225800-25227200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:25225800-25227200	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:25225800-25227200	Weak transcription	Fetal Stomach	stomach
39	chr10:25225800-25229000	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:25225800-25232800	Weak transcription	Fetal Intestine Small	intestine
41	chr10:25225800-25233600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:25226000-25233200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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