Variant report

Variant	rs7091416
Chromosome Location	chr10:25278375-25278376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25277210..25278984-chr10:25279762..25281866,2	K562	blood:
2	chr10:25011866..25014535-chr10:25277806..25280414,2	K562	blood:
3	chr10:25241921..25243506-chr10:25276442..25278938,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11014310	1.00[AMR][1000 genomes]
rs1158057	1.00[AMR][1000 genomes]
rs12098488	1.00[AMR][1000 genomes]
rs1352983	0.85[YRI][hapmap]
rs16925204	1.00[AMR][1000 genomes]
rs16925206	1.00[AMR][1000 genomes]
rs16925213	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925221	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16925231	0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34736361	1.00[AMR][1000 genomes]
rs3920009	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7901799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7091416	ARHGAP21	cis	lymphoblastoid	seeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25264400-25281800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:25264600-25292200	Weak transcription	Ovary	ovary
3	chr10:25272400-25281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25275400-25278400	Enhancers	Brain Hippocampus Middle	brain
5	chr10:25276600-25280400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:25277400-25278400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:25277400-25278600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:25277600-25278400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:25277600-25278400	Enhancers	Brain Anterior Caudate	brain
10	chr10:25277600-25278400	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:25277600-25278400	Enhancers	Brain Substantia Nigra	brain
12	chr10:25277600-25278600	Enhancers	Fetal Brain Male	brain
13	chr10:25277800-25278400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:25277800-25278400	Enhancers	Brain Angular Gyrus	brain
15	chr10:25277800-25278400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:25277800-25278400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:25277800-25278400	Enhancers	Fetal Thymus	thymus
18	chr10:25277800-25278400	Enhancers	Gastric	stomach
19	chr10:25277800-25278400	Enhancers	Left Ventricle	heart
20	chr10:25277800-25278400	Enhancers	Pancreas	Pancrea
21	chr10:25277800-25278400	Enhancers	Right Atrium	heart
22	chr10:25277800-25278400	Enhancers	Spleen	Spleen
23	chr10:25277800-25278400	Enhancers	HUVEC	blood vessel
24	chr10:25277800-25278400	Flanking Active TSS	K562	blood
25	chr10:25277800-25278600	Enhancers	Fetal Brain Female	brain
26	chr10:25277800-25279200	Enhancers	Adipose Nuclei	Adipose
27	chr10:25278000-25278400	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:25278200-25278400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:25278200-25278400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:25278200-25278400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:25278200-25278400	Enhancers	Esophagus	oesophagus
32	chr10:25278200-25278400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:25278200-25278400	Enhancers	A549	lung
34	chr10:25278200-25279000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links