Variant report

Variant	rs16925206
Chromosome Location	chr10:25266966-25266967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11014310	1.00[AMR][1000 genomes]
rs1158057	1.00[AMR][1000 genomes]
rs12098488	1.00[AMR][1000 genomes]
rs16925204	1.00[AMR][1000 genomes]
rs16925213	1.00[AMR][1000 genomes]
rs16925221	1.00[AMR][1000 genomes]
rs16925231	1.00[AMR][1000 genomes]
rs34736361	1.00[AMR][1000 genomes]
rs3920009	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7091416	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7901799	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25259200-25269000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25262400-25269200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25263400-25272000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25264400-25267200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:25264400-25271600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:25264400-25277600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:25264400-25277800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:25264400-25281800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:25264600-25292200	Weak transcription	Ovary	ovary
10	chr10:25264800-25268200	Weak transcription	Brain Substantia Nigra	brain
11	chr10:25265000-25272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:25266400-25267400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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