Variant report

Variant	rs11029559
Chromosome Location	chr11:26464352-26464353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11029561	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12276198	0.95[ASN][1000 genomes]
rs12280286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12295996	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12577529	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381175	0.95[ASN][1000 genomes]
rs1461361	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1461362	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4394800	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26463200-26464800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26463400-26464400	Enhancers	NHDF-Ad	bronchial
4	chr11:26463400-26464600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:26464000-26464400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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