Variant report

Variant	rs12280286
Chromosome Location	chr11:26470679-26470680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10501050	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10834976	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11029548	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11029549	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11029551	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11029553	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11029554	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11029559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11029560	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11029561	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12276198	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12279935	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12289490	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12295996	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12577529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1381175	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1389460	0.89[JPT][hapmap]
rs1461360	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1461361	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1461362	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1493740	1.00[JPT][hapmap]
rs1602934	0.89[JPT][hapmap]
rs1602941	0.89[JPT][hapmap]
rs16915643	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2201335	1.00[JPT][hapmap]
rs2350207	0.83[CHB][hapmap]
rs41480944	0.89[JPT][hapmap]
rs4244524	0.89[JPT][hapmap]
rs4394800	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4505017	1.00[JPT][hapmap]
rs7122814	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26468600-26471600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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