Variant report

Variant	rs12276198
Chromosome Location	chr11:26445437-26445438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:26445394-26445450	GM12878	blood:	n/a	n/a
2	ZNF384	chr11:26445434-26445608	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000255505	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10501050	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs10834976	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11029548	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11029549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11029551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11029553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11029554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11029559	0.95[ASN][1000 genomes]
rs11029560	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029561	0.92[ASN][1000 genomes]
rs12279935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12280286	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12289490	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs12295996	0.81[ASN][1000 genomes]
rs12577529	0.97[ASN][1000 genomes]
rs1381175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs1389460	0.82[CHD][hapmap]
rs1461360	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1461361	0.82[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1461362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs1461386	1.00[TSI][hapmap]
rs1493740	0.90[JPT][hapmap]
rs16915643	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs2201335	0.90[JPT][hapmap]
rs2350207	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs41480944	0.82[CHD][hapmap]
rs4394800	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs4505017	0.90[JPT][hapmap]
rs7122814	0.82[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links