Variant report

Variant	rs1493740
Chromosome Location	chr11:26497667-26497668
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501050	0.90[JPT][hapmap]
rs10767539	0.90[ASN][1000 genomes]
rs10834976	0.90[JPT][hapmap]
rs11029548	0.90[JPT][hapmap]
rs11029549	0.90[JPT][hapmap]
rs11029551	0.88[JPT][hapmap]
rs11029553	0.90[JPT][hapmap]
rs11029554	0.90[JPT][hapmap]
rs11029560	0.88[JPT][hapmap]
rs12276198	0.90[JPT][hapmap]
rs12279935	0.90[JPT][hapmap]
rs12280286	1.00[JPT][hapmap]
rs12289490	0.90[JPT][hapmap]
rs1381175	0.90[JPT][hapmap]
rs1389460	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1461360	0.90[JPT][hapmap]
rs1461361	0.90[JPT][hapmap]
rs1461362	0.90[JPT][hapmap]
rs1509169	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1602934	0.90[JPT][hapmap]
rs1602941	0.90[JPT][hapmap]
rs16915643	0.90[JPT][hapmap]
rs2087973	0.89[ASN][1000 genomes]
rs2101747	0.90[ASN][1000 genomes]
rs2131695	0.90[ASN][1000 genomes]
rs2201335	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs41480944	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4244524	0.90[JPT][hapmap]
rs4505017	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7112683	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs7122814	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72889140	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938919	0.90[ASN][1000 genomes]
rs994136	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26496800-26498200	Active TSS	Brain Anterior Caudate	brain

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