Variant report

Variant	rs11029560
Chromosome Location	chr11:26466112-26466113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10047414	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10047464	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10501050	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10742138	0.95[ASN][1000 genomes]
rs10742139	0.95[ASN][1000 genomes]
rs10767528	0.87[ASN][1000 genomes]
rs10767529	0.98[ASN][1000 genomes]
rs10767530	0.98[ASN][1000 genomes]
rs10767531	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10767532	0.98[ASN][1000 genomes]
rs10767535	0.98[ASN][1000 genomes]
rs10834976	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10834982	0.89[ASN][1000 genomes]
rs11029548	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029549	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029551	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029553	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029554	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11029555	0.97[ASN][1000 genomes]
rs11029556	0.98[ASN][1000 genomes]
rs11029557	0.98[ASN][1000 genomes]
rs11500182	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11820893	0.90[ASN][1000 genomes]
rs12273739	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12275424	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12276198	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12277506	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12279935	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12280286	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12288668	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288844	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12289490	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12575612	0.85[ASN][1000 genomes]
rs1381175	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1461360	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1461361	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1461362	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1493740	0.88[JPT][hapmap]
rs16915643	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1845355	0.82[AMR][1000 genomes]
rs2029712	0.96[ASN][1000 genomes]
rs2201335	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs4032918	0.97[ASN][1000 genomes]
rs4339995	0.98[ASN][1000 genomes]
rs4394800	0.88[JPT][hapmap]
rs4489698	0.98[ASN][1000 genomes]
rs4505017	0.88[JPT][hapmap]
rs4923359	0.89[ASN][1000 genomes]
rs57857863	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107402	0.98[ASN][1000 genomes]
rs7107710	0.98[ASN][1000 genomes]
rs7107960	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7108703	0.94[ASN][1000 genomes]
rs7109872	0.86[ASN][1000 genomes]
rs7111512	0.89[ASN][1000 genomes]
rs7115101	0.97[ASN][1000 genomes]
rs7122814	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs7123118	0.94[ASN][1000 genomes]
rs7123359	0.94[ASN][1000 genomes]
rs7127048	0.81[EUR][1000 genomes]
rs72886266	0.80[EUR][1000 genomes]
rs72886272	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7925575	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26464800-26468200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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