Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:26448361-26448420	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255505	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10501050	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs10834976	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs11029548	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs11029549	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11029551	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap]
rs11029553	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11029554	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11029559	0.98[ASN][1000 genomes]
rs11029560	0.88[JPT][hapmap]
rs11029561	0.95[ASN][1000 genomes]
rs12276198	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs12279935	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12280286	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12289490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs12295996	0.84[ASN][1000 genomes]
rs12577529	1.00[ASN][1000 genomes]
rs1381175	0.92[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1389460	0.81[CHD][hapmap]
rs1461360	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1461361	0.92[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs1461362	0.92[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs16915643	0.92[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs2350207	0.83[CHB][hapmap]
rs41480944	0.81[CHD][hapmap]
rs7122814	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26447200-26463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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