Variant report

Variant	rs11038348
Chromosome Location	chr11:45217232-45217233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45200855..45203126-chr11:45215617..45218451,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10160228	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271122	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12289677	0.88[AMR][1000 genomes]
rs12417962	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12573851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12573853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2012408	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2863164	0.95[AMR][1000 genomes]
rs34007448	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740784	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3758718	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3758720	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3758721	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3758724	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3781703	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4755949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755959	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61880311	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880320	0.95[AMR][1000 genomes]
rs61880323	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7105035	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7108362	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7125368	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202000-45220000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
4	chr11:45203400-45217600	Weak transcription	NH-A	brain
5	chr11:45203400-45221200	Weak transcription	NHEK	skin
6	chr11:45203400-45230400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:45203400-45231000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:45203600-45226200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45203600-45231000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:45205200-45230400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:45205800-45226400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
13	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:45206400-45226000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:45206600-45251600	Weak transcription	HepG2	liver
17	chr11:45207000-45232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:45207200-45222000	Strong transcription	Fetal Intestine Large	intestine
19	chr11:45207200-45230200	Weak transcription	Colonic Mucosa	Colon
20	chr11:45207600-45229400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:45210000-45226200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:45210000-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:45210200-45220800	Weak transcription	Left Ventricle	heart
25	chr11:45210200-45224600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:45210200-45225800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:45210200-45226400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:45210200-45227800	Weak transcription	Right Ventricle	heart
29	chr11:45210200-45230200	Weak transcription	Brain Angular Gyrus	brain
30	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:45210400-45217800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:45210400-45219600	Weak transcription	Aorta	Aorta
34	chr11:45210400-45225600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:45210400-45226000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:45210400-45226200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:45210400-45226200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:45210400-45226200	Weak transcription	Pancreas	Pancrea
39	chr11:45210400-45229600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:45210400-45229600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:45210400-45230400	Weak transcription	Placenta	Placenta
42	chr11:45210400-45230400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:45210400-45230600	Weak transcription	Fetal Brain Male	brain
44	chr11:45210400-45230800	Weak transcription	Brain Substantia Nigra	brain
45	chr11:45210400-45230800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:45210400-45231200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:45210400-45232000	Weak transcription	Hela-S3	cervix
48	chr11:45210600-45226400	Weak transcription	Esophagus	oesophagus
49	chr11:45210600-45229600	Weak transcription	Gastric	stomach
50	chr11:45211000-45226000	Weak transcription	Primary T cells from cord blood	blood

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