Variant report

Variant	rs2863164
Chromosome Location	chr11:45228817-45228818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160228	0.89[AMR][1000 genomes]
rs11038347	0.95[AMR][1000 genomes]
rs11038348	0.95[AMR][1000 genomes]
rs12271122	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12289677	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12417962	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12573851	0.95[AMR][1000 genomes]
rs12573853	0.95[AMR][1000 genomes]
rs2012408	0.83[AMR][1000 genomes]
rs34007448	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3740784	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758718	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758720	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758721	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758724	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3781703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4755949	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4755959	0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61880311	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61880320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61880323	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105035	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7108362	0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[MEX][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2863164	OR4X2	cis	cerebellum	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
3	chr11:45203400-45230400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:45203400-45231000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:45203600-45231000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:45205200-45230400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
8	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:45206600-45251600	Weak transcription	HepG2	liver
11	chr11:45207000-45232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:45207200-45230200	Weak transcription	Colonic Mucosa	Colon
13	chr11:45207600-45229400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr11:45210000-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:45210200-45230200	Weak transcription	Brain Angular Gyrus	brain
17	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:45210400-45229600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:45210400-45229600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:45210400-45230400	Weak transcription	Placenta	Placenta
22	chr11:45210400-45230400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:45210400-45230600	Weak transcription	Fetal Brain Male	brain
24	chr11:45210400-45230800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:45210400-45230800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:45210400-45231200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:45210400-45232000	Weak transcription	Hela-S3	cervix
28	chr11:45210600-45229600	Weak transcription	Gastric	stomach
29	chr11:45211800-45229600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:45211800-45230200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:45211800-45231000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:45212800-45229800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:45214400-45234800	Weak transcription	A549	lung
34	chr11:45214600-45231000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:45215600-45230200	Weak transcription	Psoas Muscle	Psoas
36	chr11:45215800-45230000	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:45215800-45231000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:45218600-45230000	Weak transcription	Fetal Kidney	kidney
39	chr11:45221200-45230600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:45221200-45231400	Weak transcription	Thymus	Thymus
41	chr11:45221800-45230400	Weak transcription	Ovary	ovary
42	chr11:45222600-45230200	Weak transcription	Fetal Lung	lung
43	chr11:45223400-45229600	Strong transcription	Fetal Intestine Small	intestine
44	chr11:45223400-45230800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:45223600-45229600	Strong transcription	Fetal Intestine Large	intestine
46	chr11:45224600-45231000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:45224800-45229600	Weak transcription	Aorta	Aorta
48	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:45225400-45230400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr11:45225600-45229800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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