The 2.0 version of rSNPBase

Variant report

Variant rs61880320
Chromosome Location chr11:45230122-45230123
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45202800-45234000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr11:45203000-45237000 Weak transcription Small Intestine intestine
3 chr11:45203400-45230400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr11:45203400-45231000 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr11:45203600-45231000 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr11:45205200-45230400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr11:45205800-45238800 Weak transcription HSMMtube muscle
8 chr11:45205800-45251800 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr11:45206000-45247800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr11:45206600-45251600 Weak transcription HepG2 liver
11 chr11:45207000-45232400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr11:45207200-45230200 Weak transcription Colonic Mucosa Colon
13 chr11:45209000-45235200 Weak transcription Primary T cells fromperipheralblood blood
14 chr11:45210000-45234200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr11:45210200-45230200 Weak transcription Brain Angular Gyrus brain
16 chr11:45210200-45247600 Weak transcription H9 Cell Line embryonic stem cell
17 chr11:45210200-45251600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr11:45210400-45230400 Weak transcription Placenta Placenta
19 chr11:45210400-45230400 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr11:45210400-45230600 Weak transcription Fetal Brain Male brain
21 chr11:45210400-45230800 Weak transcription Brain Substantia Nigra brain
22 chr11:45210400-45230800 Weak transcription Rectal Smooth Muscle rectum
23 chr11:45210400-45231200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr11:45210400-45232000 Weak transcription Hela-S3 cervix
25 chr11:45211800-45230200 Weak transcription Brain Cingulate Gyrus brain
26 chr11:45211800-45231000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr11:45214400-45234800 Weak transcription A549 lung
28 chr11:45214600-45231000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr11:45215600-45230200 Weak transcription Psoas Muscle Psoas
30 chr11:45215800-45231000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr11:45221200-45230600 Weak transcription Primary hematopoietic stem cells blood
32 chr11:45221200-45231400 Weak transcription Thymus Thymus
33 chr11:45221800-45230400 Weak transcription Ovary ovary
34 chr11:45222600-45230200 Weak transcription Fetal Lung lung
35 chr11:45223400-45230800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr11:45224600-45231000 Strong transcription Primary hematopoietic stem cells short term culture blood
37 chr11:45224800-45247800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr11:45225400-45230400 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr11:45225800-45231200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr11:45226000-45231000 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr11:45226400-45230200 Weak transcription H1 Cell Line embryonic stem cell
42 chr11:45226400-45234200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr11:45226600-45231000 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr11:45226800-45230200 Weak transcription Pancreas Pancrea
45 chr11:45227000-45230400 Weak transcription Brain Inferior Temporal Lobe brain
46 chr11:45227000-45231200 Weak transcription Duodenum Mucosa Duodenum
47 chr11:45227000-45234000 Enhancers Right Atrium heart
48 chr11:45227200-45230200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr11:45227200-45230600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr11:45227400-45230600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015