Variant report

Variant	rs3758718
Chromosome Location	chr11:45250498-45250499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45166849..45169188-chr11:45250056..45252141,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10160228	0.87[CHB][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11038347	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11038348	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12271122	0.87[AMR][1000 genomes]
rs12289677	0.81[AMR][1000 genomes]
rs12417962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573851	0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12573853	0.93[CHB][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2012408	0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2863164	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2863165	0.88[CHB][hapmap]
rs34007448	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3740784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755949	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4755959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61880311	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61880320	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61880323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108362	0.88[AMR][1000 genomes]
rs7125368	0.86[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206600-45251600	Weak transcription	HepG2	liver
3	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:45235600-45251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
7	chr11:45237200-45252400	Weak transcription	Psoas Muscle	Psoas
8	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
9	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:45240400-45251600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:45240400-45252000	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:45240800-45250600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:45240800-45250800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:45240800-45251400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:45241000-45251000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:45241000-45252400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr11:45241200-45250800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr11:45241400-45250600	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:45241800-45251200	Strong transcription	Fetal Lung	lung
20	chr11:45245200-45250800	Strong transcription	Brain Cingulate Gyrus	brain
21	chr11:45245200-45251000	Strong transcription	Brain Germinal Matrix	brain
22	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
23	chr11:45245600-45250800	Strong transcription	Fetal Intestine Small	intestine
24	chr11:45245800-45250800	Strong transcription	Primary B cells from cord blood	blood
25	chr11:45246000-45250600	Strong transcription	Left Ventricle	heart
26	chr11:45246000-45254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:45247600-45250600	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:45247800-45250600	Strong transcription	Brain Substantia Nigra	brain
29	chr11:45247800-45255000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:45248200-45254800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:45248200-45255200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:45248400-45254800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:45248600-45250800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:45248600-45250800	Weak transcription	Small Intestine	intestine
35	chr11:45248600-45252400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:45248800-45250800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:45248800-45251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:45248800-45251200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:45248800-45251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:45248800-45254800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:45248800-45254800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:45249000-45250600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:45249000-45250600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:45249000-45251200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:45249000-45252000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:45249000-45252000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:45249000-45252600	Strong transcription	Fetal Intestine Large	intestine
49	chr11:45249000-45254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:45249000-45254800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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