Variant report

Variant	rs11038646
Chromosome Location	chr11:45788094-45788095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr11:45788030-45788388	A549	lung:	n/a	chr11:45788321-45788347 chr11:45788210-45788224
2	NR3C1	chr11:45788063-45788373	A549	lung:	n/a	chr11:45788321-45788347 chr11:45788210-45788224
3	NR3C1	chr11:45788039-45788452	A549	lung:	n/a	chr11:45788321-45788347 chr11:45788210-45788224

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45786693..45788289-chr11:45868483..45871158,2	K562	blood:
2	chr11:45785983..45788422-chr11:45790928..45793070,2	K562	blood:

Variant related genes	Relation type
ENSG00000205106	TF binding region
ENSG00000121671	Chromatin interaction
ENSG00000205106	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11038645	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038647	0.87[ASN][1000 genomes]
rs11038662	0.81[ASN][1000 genomes]
rs12286489	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12291983	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12295599	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365302	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs12790201	0.82[ASN][1000 genomes]
rs12802077	0.82[ASN][1000 genomes]
rs12805705	0.81[ASN][1000 genomes]
rs1530634	0.92[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs16938361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2593739	0.90[ASN][1000 genomes]
rs2666922	0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34061867	0.87[ASN][1000 genomes]
rs34462032	1.00[ASN][1000 genomes]
rs34571612	0.82[ASN][1000 genomes]
rs34764250	0.81[ASN][1000 genomes]
rs35133667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35624205	0.82[ASN][1000 genomes]
rs35730296	0.81[ASN][1000 genomes]
rs35795927	1.00[ASN][1000 genomes]
rs35882101	0.81[ASN][1000 genomes]
rs35997126	1.00[ASN][1000 genomes]
rs3740704	0.83[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs3808976	0.94[CHD][hapmap]
rs4589265	0.81[ASN][1000 genomes]
rs7937659	0.93[ASN][1000 genomes]
rs7941885	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45787200-45788800	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr11:45787200-45792400	Weak transcription	Fetal Heart	heart
3	chr11:45787400-45788600	Enhancers	Left Ventricle	heart
4	chr11:45787600-45788400	Enhancers	Gastric	stomach
5	chr11:45787600-45788400	Enhancers	Pancreas	Pancrea
6	chr11:45787600-45788600	Enhancers	Right Atrium	heart
7	chr11:45787600-45788600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:45787800-45792600	Weak transcription	Right Ventricle	heart

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