Variant report

Variant	rs12295599
Chromosome Location	chr11:45790983-45790984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:45790880-45791030	WERI-Rb-1	eye:	n/a	n/a

Variant related genes	Relation type
ENSG00000205106	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11038645	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038646	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038647	0.91[ASN][1000 genomes]
rs11038662	0.84[ASN][1000 genomes]
rs12286489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12291983	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790201	0.86[ASN][1000 genomes]
rs12802077	0.86[ASN][1000 genomes]
rs12805705	0.84[ASN][1000 genomes]
rs1530634	0.84[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs16938361	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2593739	0.86[ASN][1000 genomes]
rs2666922	0.84[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs34061867	0.83[ASN][1000 genomes]
rs34462032	0.96[ASN][1000 genomes]
rs34571612	0.86[ASN][1000 genomes]
rs34764250	0.84[ASN][1000 genomes]
rs35133667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35624205	0.86[ASN][1000 genomes]
rs35730296	0.84[ASN][1000 genomes]
rs35795927	0.96[ASN][1000 genomes]
rs35882101	0.84[ASN][1000 genomes]
rs35997126	0.96[ASN][1000 genomes]
rs3740704	0.92[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3808976	0.94[CHD][hapmap]
rs4589265	0.84[ASN][1000 genomes]
rs7937659	0.89[ASN][1000 genomes]
rs7941885	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45787200-45792400	Weak transcription	Fetal Heart	heart
2	chr11:45787800-45792600	Weak transcription	Right Ventricle	heart
3	chr11:45788400-45792600	Weak transcription	Gastric	stomach
4	chr11:45788400-45792600	Weak transcription	Pancreas	Pancrea
5	chr11:45788600-45792600	Weak transcription	Left Ventricle	heart
6	chr11:45788600-45793000	Weak transcription	Right Atrium	heart
7	chr11:45788800-45792600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:45789400-45793000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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