Variant report

Variant	rs11038647
Chromosome Location	chr11:45794136-45794137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45361279..45362163-chr11:45793016..45794170,5	MCF-7	breast:
2	chr11:45361263..45362212-chr11:45793106..45794141,7	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11038645	0.87[ASN][1000 genomes]
rs11038646	1.00[CHD][hapmap];0.88[GIH][hapmap];0.87[ASN][1000 genomes]
rs11038662	0.87[ASN][1000 genomes]
rs12286489	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs12291983	0.91[ASN][1000 genomes]
rs12295599	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12790201	0.88[ASN][1000 genomes]
rs12802077	0.88[ASN][1000 genomes]
rs12805705	0.87[ASN][1000 genomes]
rs1530634	1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs16938361	0.91[ASN][1000 genomes]
rs2593739	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2666922	0.94[ASW][hapmap];0.91[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34462032	0.87[ASN][1000 genomes]
rs34571612	0.88[ASN][1000 genomes]
rs34764250	0.87[ASN][1000 genomes]
rs35133667	0.91[ASN][1000 genomes]
rs35624205	0.88[ASN][1000 genomes]
rs35730296	0.87[ASN][1000 genomes]
rs35795927	0.87[ASN][1000 genomes]
rs35882101	0.87[ASN][1000 genomes]
rs35997126	0.87[ASN][1000 genomes]
rs3740704	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808976	0.82[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4589265	0.87[ASN][1000 genomes]
rs7937659	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7941885	0.81[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11038647	ACCS	cis	cerebellum	SCAN
rs11038647	CD82	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45792800-45794400	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:45793200-45794200	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr11:45793600-45794200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:45793600-45794200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:45793600-45794200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:45793600-45794200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:45793600-45794200	Enhancers	Colon Smooth Muscle	Colon
8	chr11:45793600-45795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:45793600-45796400	Enhancers	Fetal Brain Male	brain
10	chr11:45793600-45802200	Weak transcription	Spleen	Spleen
11	chr11:45793800-45794200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:45793800-45794200	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:45793800-45794200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:45793800-45794200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr11:45793800-45794200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:45793800-45794200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:45793800-45794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:45793800-45794200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:45793800-45794200	Enhancers	Fetal Brain Female	brain
20	chr11:45793800-45794200	Enhancers	Thymus	Thymus
21	chr11:45793800-45794400	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:45793800-45794400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:45793800-45794400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:45793800-45794800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:45793800-45795600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:45794000-45794200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:45794000-45794200	Enhancers	Primary T cells from cord blood	blood
28	chr11:45794000-45794200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:45794000-45794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:45794000-45794200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:45794000-45794200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:45794000-45794200	Enhancers	Hela-S3	cervix
33	chr11:45794000-45794200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:45794000-45794400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr11:45794000-45794400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr11:45794000-45794600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:45794000-45794600	Enhancers	Liver	Liver
38	chr11:45794000-45794600	Enhancers	Dnd41	blood
39	chr11:45794000-45794800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr11:45794000-45794800	Enhancers	GM12878-XiMat	blood
41	chr11:45794000-45796600	Enhancers	Adipose Nuclei	Adipose

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