Variant report

Variant	rs11038669
Chromosome Location	chr11:45839398-45839399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45836782..45839612-chr11:45867458..45870636,4	MCF-7	breast:
2	chr11:45837750..45841192-chr11:45868831..45870857,3	MCF-7	breast:
3	chr11:45837232..45839934-chr11:45842707..45845074,2	K562	blood:
4	chr11:45838111..45839988-chr11:45841700..45845472,4	K562	blood:
5	chr11:45833466..45835015-chr11:45838318..45840178,2	K562	blood:

Variant related genes	Relation type
ENSG00000255447	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10742769	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038693	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1533614	0.98[EUR][1000 genomes]
rs2056260	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2292913	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4755344	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4755345	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4756028	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756035	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4756039	0.96[EUR][1000 genomes]
rs57989022	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108887	0.83[EUR][1000 genomes]
rs7115967	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7482133	0.84[AFR][1000 genomes]
rs9666007	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9787929	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45832200-45839600	Weak transcription	Fetal Heart	heart
2	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
3	chr11:45833800-45841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:45833800-45845400	Weak transcription	Ovary	ovary
5	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:45834000-45845400	Weak transcription	Fetal Intestine Large	intestine
7	chr11:45834000-45845400	Weak transcription	Left Ventricle	heart
8	chr11:45834400-45845000	Weak transcription	Fetal Lung	lung
9	chr11:45834400-45845400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:45834400-45845600	Weak transcription	Gastric	stomach
11	chr11:45834600-45839600	Weak transcription	Placenta	Placenta
12	chr11:45834600-45845400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:45834600-45845400	Weak transcription	Lung	lung
14	chr11:45835000-45843200	Weak transcription	K562	blood
15	chr11:45835000-45844600	Weak transcription	Fetal Intestine Small	intestine
16	chr11:45835000-45845400	Weak transcription	Dnd41	blood
17	chr11:45837200-45839600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:45837600-45845400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:45837600-45845400	Weak transcription	Fetal Kidney	kidney
20	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:45838000-45845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:45838200-45839800	Enhancers	GM12878-XiMat	blood
23	chr11:45838200-45841200	Enhancers	Primary B cells from peripheral blood	blood
24	chr11:45838400-45839400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:45838400-45841200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:45838600-45840800	Enhancers	Primary B cells from cord blood	blood
27	chr11:45839000-45839600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:45839000-45839600	Enhancers	Spleen	Spleen
29	chr11:45839200-45839800	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links