Variant report

Variant	rs4756028
Chromosome Location	chr11:45835846-45835847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10742769	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038665	0.92[ASN][1000 genomes]
rs11038666	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038669	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038693	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1533614	0.91[EUR][1000 genomes]
rs2056260	0.81[AMR][1000 genomes]
rs2292913	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4755344	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4755345	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756027	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4756035	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756039	0.89[EUR][1000 genomes]
rs57989022	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115967	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7943306	0.97[ASN][1000 genomes]
rs9666007	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45828000-45837200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:45828000-45837200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45829600-45836000	Weak transcription	HepG2	liver
4	chr11:45831200-45837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:45831600-45837400	Weak transcription	Hela-S3	cervix
6	chr11:45832000-45838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:45832200-45839600	Weak transcription	Fetal Heart	heart
8	chr11:45832800-45837200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:45833000-45837200	Weak transcription	A549	lung
10	chr11:45833600-45837200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
12	chr11:45833800-45837200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:45833800-45837400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:45833800-45837400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:45833800-45837600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:45833800-45837600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:45833800-45837600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:45833800-45838200	Weak transcription	GM12878-XiMat	blood
19	chr11:45833800-45838600	Weak transcription	Primary B cells from cord blood	blood
20	chr11:45833800-45841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:45833800-45845400	Weak transcription	Ovary	ovary
22	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
23	chr11:45834000-45836000	Weak transcription	NHEK	skin
24	chr11:45834000-45836200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:45834000-45836600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:45834000-45836800	Weak transcription	NHDF-Ad	bronchial
27	chr11:45834000-45837400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:45834000-45837600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:45834000-45838200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:45834000-45845400	Weak transcription	Fetal Intestine Large	intestine
31	chr11:45834000-45845400	Weak transcription	Left Ventricle	heart
32	chr11:45834200-45836000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:45834200-45836200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:45834200-45836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:45834200-45836200	Weak transcription	Brain Anterior Caudate	brain
36	chr11:45834200-45836400	Weak transcription	Thymus	Thymus
37	chr11:45834200-45836600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:45834200-45837200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:45834200-45837400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:45834200-45837400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:45834200-45837400	Weak transcription	HSMMtube	muscle
42	chr11:45834200-45838800	Weak transcription	Colonic Mucosa	Colon
43	chr11:45834200-45839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:45834200-45839000	Weak transcription	Spleen	Spleen
45	chr11:45834200-45839200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:45834400-45836200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:45834400-45836200	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:45834400-45836200	Weak transcription	Fetal Thymus	thymus
49	chr11:45834400-45836200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr11:45834400-45836400	Weak transcription	Primary monocytes fromperipheralblood	blood

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