Variant report

Variant	rs1533614
Chromosome Location	chr11:45913652-45913653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000121653	Chromatin interaction
ENSG00000181830	Chromatin interaction
ENSG00000234776	Chromatin interaction
ENSG00000255498	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742769	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.98[EUR][1000 genomes]
rs11038666	0.96[EUR][1000 genomes]
rs11038669	0.98[EUR][1000 genomes]
rs11038693	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2056260	0.80[ASN][1000 genomes]
rs2292913	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4755344	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4755345	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4756028	0.91[EUR][1000 genomes]
rs4756035	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes]
rs4756039	1.00[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57989022	0.98[EUR][1000 genomes]
rs6798	0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7108887	0.81[EUR][1000 genomes]
rs7115967	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9666007	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1047462	chr11:45898630-45953696	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv516442	chr11:45899962-45983385	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv1794798	chr11:45903280-45953636	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv1805505	chr11:45912324-45956109	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45907600-45920800	Weak transcription	Right Atrium	heart
2	chr11:45908400-45914800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45908400-45916200	Weak transcription	Brain Anterior Caudate	brain
4	chr11:45908600-45917600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:45909400-45914200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:45910000-45917400	Weak transcription	Fetal Brain Female	brain
7	chr11:45911800-45914400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45912400-45915200	Enhancers	Liver	Liver
9	chr11:45912800-45916200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:45912800-45916400	Weak transcription	Fetal Brain Male	brain
11	chr11:45913200-45913800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:45913200-45914600	Strong transcription	Brain Germinal Matrix	brain
13	chr11:45913400-45914000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:45913400-45916200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:45913400-45916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:45913600-45914000	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:45913600-45914400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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