Variant report

Variant	rs4755344
Chromosome Location	chr11:45883955-45883956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45879542..45881910-chr11:45883582..45885130,2	K562	blood:
2	chr11:45879121..45881572-chr11:45883616..45886699,3	K562	blood:
3	chr11:45880394..45882824-chr11:45883055..45886463,3	MCF-7	breast:
4	chr11:45883027..45884736-chr11:46029523..46031223,2	K562	blood:
5	chr11:45883450..45885208-chr11:45897811..45899521,2	K562	blood:
6	chr11:45880518..45884528-chr11:45890317..45893534,5	MCF-7	breast:
7	chr11:45883913..45885950-chr11:45887391..45889082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742769	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038666	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038693	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533614	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2056260	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2292913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756028	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756039	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57989022	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7108887	0.83[EUR][1000 genomes]
rs7115967	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9666007	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45874200-45904200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:45875200-45905600	Strong transcription	Primary T cells from cord blood	blood
3	chr11:45875400-45893400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:45875800-45904200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:45876400-45904200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:45876800-45894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:45876800-45895600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:45876800-45895600	Strong transcription	Thymus	Thymus
9	chr11:45876800-45900200	Strong transcription	Primary B cells from cord blood	blood
10	chr11:45876800-45903600	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:45876800-45904600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:45877000-45885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:45877000-45885800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:45877000-45885800	Strong transcription	Dnd41	blood
15	chr11:45877000-45885800	Strong transcription	GM12878-XiMat	blood
16	chr11:45877000-45885800	Strong transcription	K562	blood
17	chr11:45877000-45886000	Strong transcription	HepG2	liver
18	chr11:45877000-45893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:45877000-45895600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:45877200-45886000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:45877200-45893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:45877400-45887200	Strong transcription	Primary hematopoietic stem cells	blood
23	chr11:45877400-45899800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:45877400-45900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:45877400-45903800	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:45877400-45904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:45878600-45885800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:45878600-45888200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:45879200-45901200	Weak transcription	A549	lung
30	chr11:45880000-45903400	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr11:45880200-45904600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:45880400-45904200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:45880600-45891000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:45880600-45904600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:45881200-45905200	Strong transcription	Fetal Intestine Large	intestine
36	chr11:45881400-45886200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:45881600-45886200	Strong transcription	Fetal Thymus	thymus
38	chr11:45881600-45887800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:45881600-45891600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:45881600-45895600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:45881600-45895800	Strong transcription	Fetal Brain Female	brain
42	chr11:45881800-45885800	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:45881800-45885800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:45881800-45886400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:45881800-45889000	Weak transcription	Stomach Mucosa	stomach
46	chr11:45881800-45892000	Weak transcription	HUVEC	blood vessel
47	chr11:45881800-45893600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:45881800-45894200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:45881800-45895600	Strong transcription	Gastric	stomach
50	chr11:45881800-45900200	Strong transcription	Brain Germinal Matrix	brain

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