Variant report

Variant	rs11053572
Chromosome Location	chr12:10229281-10229282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10223493..10225542-chr12:10227830..10229831,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1001449	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs10845047	0.85[CHB][hapmap]
rs11053573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053582	0.98[ASN][1000 genomes]
rs11053587	0.98[ASN][1000 genomes]
rs11053588	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11053590	1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs11053592	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs11053597	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs11053603	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs11053613	1.00[CHB][hapmap]
rs11053615	0.85[CHB][hapmap]
rs11053617	0.85[CHB][hapmap];0.93[CHD][hapmap]
rs11533515	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11561164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831360	1.00[LWK][hapmap]
rs11832093	0.98[ASN][1000 genomes]
rs11838264	0.85[CHB][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12301411	1.00[ASN][1000 genomes]
rs1532087	1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs16910075	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2291158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2401608	0.95[ASN][1000 genomes]
rs55738961	0.98[ASN][1000 genomes]
rs55767325	0.98[ASN][1000 genomes]
rs59801652	0.92[ASN][1000 genomes]
rs61441743	0.94[ASN][1000 genomes]
rs7137840	0.93[CHD][hapmap]
rs7979266	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10219000-10236800	Weak transcription	Left Ventricle	heart
2	chr12:10220800-10234800	Weak transcription	Placenta	Placenta
3	chr12:10221400-10235000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:10222000-10234800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:10222800-10248400	Weak transcription	Psoas Muscle	Psoas
6	chr12:10223000-10232600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:10223600-10232600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr12:10224000-10234800	Weak transcription	Lung	lung
9	chr12:10228600-10247200	Weak transcription	HUVEC	blood vessel

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