Variant report

Variant	rs11053574
Chromosome Location	chr12:10242814-10242815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1001449	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10772231	0.83[YRI][hapmap]
rs10845047	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs11053572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053582	0.94[ASN][1000 genomes]
rs11053587	0.94[ASN][1000 genomes]
rs11053588	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11053590	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11053592	0.85[CHB][hapmap]
rs11053597	0.85[CHB][hapmap]
rs11053603	0.85[CHB][hapmap]
rs11053613	1.00[CHB][hapmap]
rs11053615	0.85[CHB][hapmap]
rs11053617	0.85[CHB][hapmap]
rs11533515	0.94[ASN][1000 genomes]
rs11561164	0.95[ASN][1000 genomes]
rs11832093	0.94[ASN][1000 genomes]
rs11838264	0.85[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12301411	0.95[ASN][1000 genomes]
rs1532087	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs16910075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277416	0.82[YRI][hapmap]
rs2291158	0.95[ASN][1000 genomes]
rs2401608	0.90[ASN][1000 genomes]
rs3825300	0.81[YRI][hapmap]
rs3886137	0.83[YRI][hapmap]
rs3886143	0.83[YRI][hapmap]
rs3887490	0.83[YRI][hapmap]
rs4595634	0.83[YRI][hapmap]
rs55738961	0.94[ASN][1000 genomes]
rs55767325	0.94[ASN][1000 genomes]
rs59801652	0.87[ASN][1000 genomes]
rs61441743	0.89[ASN][1000 genomes]
rs6488249	0.83[YRI][hapmap]
rs6488250	0.82[YRI][hapmap]
rs7979266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10222800-10248400	Weak transcription	Psoas Muscle	Psoas
2	chr12:10228600-10247200	Weak transcription	HUVEC	blood vessel
3	chr12:10237000-10244800	Weak transcription	Left Ventricle	heart
4	chr12:10237000-10246200	Weak transcription	Adipose Nuclei	Adipose
5	chr12:10241200-10243000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:10241200-10243800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:10241600-10243000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:10241800-10243000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:10241800-10243000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:10241800-10243000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:10241800-10243200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:10241800-10243200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr12:10242400-10243000	Flanking Active TSS	GM12878-XiMat	blood
14	chr12:10242600-10243000	Active TSS	Brain Angular Gyrus	brain
15	chr12:10242600-10243000	Active TSS	Right Atrium	heart
16	chr12:10242800-10243000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr12:10242800-10243000	Enhancers	NHEK	skin
18	chr12:10242800-10253800	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links