Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001449	0.95[ASN][1000 genomes]
rs11053572	0.98[ASN][1000 genomes]
rs11053573	0.94[ASN][1000 genomes]
rs11053574	0.94[ASN][1000 genomes]
rs11053582	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053588	1.00[ASN][1000 genomes]
rs11053590	0.93[ASN][1000 genomes]
rs11533515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11561164	0.98[ASN][1000 genomes]
rs11832093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838264	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12301411	0.98[ASN][1000 genomes]
rs1532087	0.95[ASN][1000 genomes]
rs16910075	0.94[ASN][1000 genomes]
rs2291158	0.98[ASN][1000 genomes]
rs2401608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55738961	1.00[ASN][1000 genomes]
rs55767325	1.00[ASN][1000 genomes]
rs59801652	0.93[ASN][1000 genomes]
rs61441743	0.95[ASN][1000 genomes]
rs7979266	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10255800-10264200	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search: