Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr12:10264177-10264364	K562	blood:	n/a	n/a
2	MAX	chr12:10264079-10264428	K562	blood:	n/a	n/a
3	MAX	chr12:10264190-10264398	K562	blood:	n/a	n/a
4	RAD21	chr12:10264208-10264408	K562	blood:	n/a	n/a
5	CTCF	chr12:10264181-10264429	K562	blood:	n/a	n/a
6	E2F6	chr12:10264168-10264438	K562	blood:	n/a	n/a
7	CTCF	chr12:10264140-10264470	K562	blood:	n/a	n/a
8	CTCF	chr12:10264192-10264472	K562	blood:	n/a	n/a
9	TAL1	chr12:10264211-10264309	K562	blood:	n/a	n/a

Variant related genes	Relation type
CLEC1A	TF binding region
HNRNPABP1	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001449	0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs11053572	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11053573	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11053574	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11053582	1.00[ASN][1000 genomes]
rs11053587	1.00[ASN][1000 genomes]
rs11053590	0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs11533515	1.00[ASN][1000 genomes]
rs11561164	0.98[ASN][1000 genomes]
rs11832093	1.00[ASN][1000 genomes]
rs11838264	0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs12301411	0.98[ASN][1000 genomes]
rs1532087	0.87[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16909966	0.82[EUR][1000 genomes]
rs16910035	0.82[EUR][1000 genomes]
rs16910075	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2291158	0.98[ASN][1000 genomes]
rs2401608	0.97[ASN][1000 genomes]
rs55738961	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56018947	0.86[EUR][1000 genomes]
rs59801652	0.93[ASN][1000 genomes]
rs60567086	0.86[EUR][1000 genomes]
rs61441743	0.95[ASN][1000 genomes]
rs61918621	0.86[EUR][1000 genomes]
rs7979266	1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10264000-10264400	Active TSS	Placenta	Placenta
2	chr12:10264200-10265200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr12:10264200-10265400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
4	chr12:10264200-10275600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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