Variant report

Variant	rs11059237
Chromosome Location	chr12:123137794-123137795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:123136299..123138191-chr12:123236263..123237846,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139726	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1021705	0.87[JPT][hapmap]
rs10847335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11058710	0.86[JPT][hapmap]
rs11059097	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11059100	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11059257	0.99[ASN][1000 genomes]
rs11059258	0.96[ASN][1000 genomes]
rs11611668	0.90[JPT][hapmap]
rs11614147	0.97[ASN][1000 genomes]
rs11614277	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs12821949	0.99[ASN][1000 genomes]
rs2245199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2936731	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34357107	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35157148	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35297311	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59355577	0.94[ASN][1000 genomes]
rs612465	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955000	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs645348	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6489179	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134265	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73224116	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73224188	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7398147	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123120200-123140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:123128200-123147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:123135600-123141000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:123135800-123141000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:123135800-123141200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:123135800-123152800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:123136600-123140800	Weak transcription	NHEK	skin
8	chr12:123136600-123154200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:123137400-123137800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr12:123137600-123137800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:123137600-123138000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:123137600-123138000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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