Variant report

Variant	rs11059257
Chromosome Location	chr12:123141346-123141347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KNTC1-3	chr12:123141072-123141805	l_749_chr12:123140234-123165633_testes

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1021705	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10847335	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs11058710	0.86[JPT][hapmap]
rs11059097	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11059237	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11059258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11611668	0.85[JPT][hapmap];0.83[YRI][hapmap]
rs11614147	0.95[CEU][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11614277	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12821949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2245199	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2936731	0.89[ASN][1000 genomes]
rs34357107	0.93[ASN][1000 genomes]
rs35157148	0.99[ASN][1000 genomes]
rs35297311	0.99[ASN][1000 genomes]
rs59355577	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs612465	0.99[ASN][1000 genomes]
rs61955000	0.83[ASN][1000 genomes]
rs645348	0.99[ASN][1000 genomes]
rs6489179	0.99[ASN][1000 genomes]
rs7134265	0.98[ASN][1000 genomes]
rs73224116	0.99[ASN][1000 genomes]
rs73224188	0.99[ASN][1000 genomes]
rs7397194	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7398147	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15230	chr12:123139888-123142070	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
2	esv16823	chr12:123140691-123141675	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
3	esv12951	chr12:123140691-123142779	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
4	nsv820326	chr12:123140691-123143044	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123128200-123147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:123135800-123152800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:123136600-123154200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:123140800-123141400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:123140800-123141600	Enhancers	GM12878-XiMat	blood
6	chr12:123140800-123141600	Enhancers	NHEK	skin
7	chr12:123140800-123153800	Weak transcription	A549	lung
8	chr12:123141000-123141400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:123141000-123141600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:123141200-123141600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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