Variant report

Variant	rs11062769
Chromosome Location	chr12:513031-513032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:509480..512671-chr12:512718..518002,7	K562	blood:
2	chr12:496401..500895-chr12:509695..513736,6	K562	blood:

Variant related genes	Relation type
ENSG00000073614	Chromatin interaction
ENSG00000120647	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1017162	1.00[EUR][1000 genomes]
rs11062328	1.00[EUR][1000 genomes]
rs11062353	1.00[EUR][1000 genomes]
rs11062355	1.00[EUR][1000 genomes]
rs11062465	1.00[EUR][1000 genomes]
rs11062616	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11062659	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11834271	1.00[EUR][1000 genomes]
rs12298836	1.00[EUR][1000 genomes]
rs12303118	1.00[EUR][1000 genomes]
rs12303378	1.00[EUR][1000 genomes]
rs12304242	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12306188	0.82[EUR][1000 genomes]
rs12314514	1.00[EUR][1000 genomes]
rs12315694	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12321513	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1541584	1.00[EUR][1000 genomes]
rs16929851	1.00[EUR][1000 genomes]
rs16930401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267987	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2284335	1.00[EUR][1000 genomes]
rs2300130	1.00[EUR][1000 genomes]
rs2887438	0.95[AMR][1000 genomes]
rs3753160	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759370	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3803158	0.95[AMR][1000 genomes]
rs3803159	0.95[AMR][1000 genomes]
rs3815557	1.00[EUR][1000 genomes]
rs4980816	0.90[AMR][1000 genomes]
rs4980887	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4980893	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57580513	0.90[EUR][1000 genomes]
rs58979246	1.00[EUR][1000 genomes]
rs720127	1.00[EUR][1000 genomes]
rs7487555	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7488483	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7970562	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541304	chr12:282465-635505	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1042991	chr12:282465-666255	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1041574	chr12:282465-812000	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv541305	chr12:282465-1016828	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv869390	chr12:282465-1045994	Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1049944	chr12:282465-1232077	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv541306	chr12:282465-1232077	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv1050781	chr12:321353-783899	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv1040849	chr12:321619-771493	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv541322	chr12:321619-771493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv1035679	chr12:321619-781558	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv1053519	chr12:321619-828175	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
13	nsv1044433	chr12:321619-1065402	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
14	nsv541323	chr12:321619-1065402	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
15	esv2757484	chr12:335010-543206	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	esv2759875	chr12:335010-990544	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
17	nsv1045638	chr12:349031-893536	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
18	nsv541325	chr12:349031-893536	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
19	nsv1050646	chr12:362398-658665	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv541326	chr12:362398-658665	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv949469	chr12:380411-1122450	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
22	nsv898565	chr12:428131-564185	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv1052201	chr12:429128-515675	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv541328	chr12:429128-515675	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv442250	chr12:432808-543847	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	esv2756520	chr12:433151-543206	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv1050226	chr12:441032-743195	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
28	nsv1035222	chr12:449993-515675	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
29	esv2758290	chr12:457433-990544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
30	nsv949226	chr12:493900-814882	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
31	nsv898566	chr12:499041-570917	Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
32	nsv1036822	chr12:504573-586674	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
33	nsv541329	chr12:504573-586674	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv514668	chr12:506474-521532	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:511200-519600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:511200-521000	Weak transcription	Lung	lung
3	chr12:511200-521000	Weak transcription	Spleen	Spleen
4	chr12:511200-521400	Weak transcription	Gastric	stomach
5	chr12:511200-521400	Weak transcription	Pancreas	Pancrea
6	chr12:511400-521000	Weak transcription	Left Ventricle	heart
7	chr12:511400-521200	Weak transcription	Ovary	ovary
8	chr12:511400-521600	Weak transcription	Aorta	Aorta
9	chr12:511600-515200	Weak transcription	Primary B cells from cord blood	blood
10	chr12:511600-515400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:511600-516200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr12:511600-519600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr12:511600-519800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:511600-519800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:511600-520800	Weak transcription	Right Ventricle	heart
16	chr12:511600-521000	Weak transcription	Placenta	Placenta
17	chr12:511600-521200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr12:511600-521400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr12:511600-521400	Weak transcription	Esophagus	oesophagus
20	chr12:511600-523600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:511600-544600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:511800-515200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:511800-515600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr12:511800-515600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr12:511800-515800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:511800-516200	Weak transcription	HSMMtube	muscle
27	chr12:511800-519600	Weak transcription	Fetal Muscle Leg	muscle
28	chr12:511800-519600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr12:511800-519800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr12:511800-520800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr12:511800-520800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr12:511800-520800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr12:511800-520800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr12:511800-520800	Weak transcription	Adipose Nuclei	Adipose
35	chr12:511800-520800	Weak transcription	Liver	Liver
36	chr12:511800-520800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr12:511800-520800	Weak transcription	Fetal Thymus	thymus
38	chr12:511800-520800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr12:511800-521000	Weak transcription	Brain Substantia Nigra	brain
40	chr12:511800-521000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr12:511800-521200	Weak transcription	Brain Anterior Caudate	brain
42	chr12:511800-522600	Weak transcription	Colonic Mucosa	Colon
43	chr12:511800-523600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr12:511800-523800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr12:511800-523800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr12:511800-524000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr12:512000-513600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:512000-513800	Enhancers	HepG2	liver
49	chr12:512000-514800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr12:512000-515200	Weak transcription	Fetal Stomach	stomach

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