Variant report

Variant	rs1106559
Chromosome Location	chr10:44892116-44892117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1106560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108537	0.98[ASN][1000 genomes]
rs1855531	1.00[ASN][1000 genomes]
rs1970629	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002194	0.95[ASN][1000 genomes]
rs2093684	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35625505	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35669959	1.00[ASN][1000 genomes]
rs4520555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534529	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56221135	1.00[ASN][1000 genomes]
rs6593412	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68005969	1.00[ASN][1000 genomes]
rs945056	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44890800-44893200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr10:44891000-44892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:44891000-44892400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:44891000-44896000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:44891200-44892400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:44891200-44893400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr10:44891800-44892200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:44891800-44892400	Bivalent Enhancer	Fetal Stomach	stomach
9	chr10:44891800-44893400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:44891800-44894200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr10:44891800-44895000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:44891800-44895800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:44892000-44894200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:44892000-44898400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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