Variant report

Variant	rs2093684
Chromosome Location	chr10:44885751-44885752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1106559	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1106560	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1108537	0.96[ASN][1000 genomes]
rs1855531	0.98[ASN][1000 genomes]
rs1970629	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2002194	0.93[ASN][1000 genomes]
rs35625505	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35669959	0.98[ASN][1000 genomes]
rs4520555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4534529	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56221135	0.98[ASN][1000 genomes]
rs6593412	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68005969	0.98[ASN][1000 genomes]
rs945056	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44882600-44885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44882600-44885800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:44882600-44885800	Weak transcription	HepG2	liver
4	chr10:44882600-44885800	Weak transcription	Osteobl	bone
5	chr10:44882800-44885800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44882800-44885800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44883800-44886200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44884200-44886800	Enhancers	Liver	Liver
9	chr10:44884800-44886400	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44885000-44885800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:44885000-44886000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:44885000-44886000	Weak transcription	Spleen	Spleen
13	chr10:44885000-44886000	Weak transcription	NHDF-Ad	bronchial
14	chr10:44885000-44886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:44885000-44886200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:44885200-44886200	Weak transcription	Pancreas	Pancrea
17	chr10:44885400-44885800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:44885400-44885800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:44885600-44886200	Enhancers	Fetal Lung	lung
20	chr10:44885600-44886400	Enhancers	Lung	lung

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