Variant report

Variant	rs11070206
Chromosome Location	chr15:39753991-39753992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39745636..39749475-chr15:39752031..39754404,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10459586	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10520130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070198	0.84[EUR][1000 genomes]
rs11070207	1.00[ASN][1000 genomes]
rs1158915	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1158916	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1158917	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11854059	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855543	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11855977	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11855990	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11857970	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12148631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1551945	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16952151	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16969038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16969042	0.88[YRI][hapmap]
rs16969047	0.81[AFR][1000 genomes]
rs16969104	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3889532	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4286083	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923830	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4924362	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5028679	1.00[CEU][hapmap];0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56839831	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56869025	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57248361	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58417285	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61648928	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171584	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73393497	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8025111	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8032303	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8034569	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39748200-39754000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:39748600-39754000	Weak transcription	NHLF	lung
4	chr15:39749400-39754000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:39752800-39755200	Enhancers	Fetal Muscle Leg	muscle
6	chr15:39753000-39754200	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:39753000-39755600	Enhancers	NHDF-Ad	bronchial
8	chr15:39753200-39754000	Weak transcription	Spleen	Spleen
9	chr15:39753200-39754600	Enhancers	Ovary	ovary
10	chr15:39753200-39754600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:39753200-39755200	Enhancers	Adipose Nuclei	Adipose
12	chr15:39753200-39755400	Enhancers	Fetal Stomach	stomach
13	chr15:39753400-39754200	Enhancers	Fetal Lung	lung
14	chr15:39753400-39754200	Enhancers	Small Intestine	intestine
15	chr15:39753400-39754200	Enhancers	HSMM	muscle
16	chr15:39753400-39754400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:39753400-39754400	Enhancers	HSMMtube	muscle
18	chr15:39753400-39754800	Enhancers	Rectal Smooth Muscle	rectum
19	chr15:39753400-39755200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:39753400-39755200	Enhancers	Left Ventricle	heart
21	chr15:39753400-39755200	Enhancers	Right Atrium	heart
22	chr15:39753400-39755200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:39753400-39756000	Enhancers	HUVEC	blood vessel
24	chr15:39753600-39754800	Enhancers	Colon Smooth Muscle	Colon
25	chr15:39753600-39755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:39753600-39755800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr15:39753600-39755800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:39753600-39755800	Enhancers	Osteobl	bone
29	chr15:39753600-39758000	Weak transcription	K562	blood
30	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
31	chr15:39753800-39754600	Enhancers	Fetal Heart	heart
32	chr15:39753800-39755400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links