Variant report

Variant	rs1158915
Chromosome Location	chr15:39766017-39766018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10459586	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520130	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070206	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070207	0.97[ASN][1000 genomes]
rs1158916	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158917	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854059	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854786	0.81[EUR][1000 genomes]
rs11855535	0.81[EUR][1000 genomes]
rs11855543	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855977	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855990	0.97[ASN][1000 genomes]
rs11857970	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12148631	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1551945	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952151	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16969038	1.00[CEU][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16969042	1.00[YRI][hapmap]
rs16969104	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3889532	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4286083	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923830	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4924362	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5028679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56839831	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56869025	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57248361	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58417285	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61648928	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7171244	0.82[MEX][hapmap]
rs7171584	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7178351	0.82[MEX][hapmap]
rs73393497	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7350779	0.82[MEX][hapmap]
rs8025111	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39759800-39766800	Weak transcription	Lung	lung
2	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
3	chr15:39761400-39766200	Weak transcription	HUVEC	blood vessel
4	chr15:39762600-39767200	Enhancers	Colon Smooth Muscle	Colon
5	chr15:39762800-39767200	Enhancers	Fetal Stomach	stomach
6	chr15:39763000-39767800	Enhancers	Fetal Lung	lung
7	chr15:39763200-39767800	Enhancers	Fetal Muscle Leg	muscle
8	chr15:39763400-39767000	Enhancers	Rectal Smooth Muscle	rectum
9	chr15:39763400-39767200	Enhancers	NHDF-Ad	bronchial
10	chr15:39763800-39766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:39764000-39767000	Enhancers	NHLF	lung
12	chr15:39764400-39767000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:39764600-39767000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:39764600-39767000	Enhancers	Adipose Nuclei	Adipose
15	chr15:39764600-39767000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:39764600-39767200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr15:39764800-39767200	Enhancers	HSMMtube	muscle
18	chr15:39765200-39766200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr15:39765200-39766400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:39765200-39767200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:39765200-39767200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:39765200-39767800	Enhancers	Pancreas	Pancrea
23	chr15:39765200-39767800	Enhancers	HSMM	muscle
24	chr15:39765400-39766200	Enhancers	Primary hematopoietic stem cells	blood
25	chr15:39765400-39766400	Enhancers	Fetal Intestine Small	intestine
26	chr15:39765600-39766600	Weak transcription	NH-A	brain
27	chr15:39765600-39767800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:39765600-39767800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:39765800-39766200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:39765800-39766800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:39765800-39766800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:39765800-39767000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:39766000-39766200	Enhancers	Fetal Intestine Large	intestine
34	chr15:39766000-39766400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:39766000-39766400	Weak transcription	Osteobl	bone
36	chr15:39766000-39766600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr15:39766000-39767000	Enhancers	Stomach Smooth Muscle	stomach
38	chr15:39766000-39768000	Enhancers	Fetal Kidney	kidney

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