Variant report

Variant	rs4923830
Chromosome Location	chr15:39749930-39749931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10459586	0.91[ASN][1000 genomes]
rs10520130	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070198	0.80[ASN][1000 genomes]
rs11070206	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070207	0.94[ASN][1000 genomes]
rs1158915	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1158916	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1158917	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11854059	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855543	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11855977	0.91[ASN][1000 genomes]
rs11855990	0.94[ASN][1000 genomes]
rs11857970	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12148631	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1551945	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16952151	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16969038	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16969104	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3889532	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4286083	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924362	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5028679	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56839831	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56869025	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57248361	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58417285	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61648928	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171584	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73393497	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8025111	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032303	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8034569	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39744600-39753400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:39748200-39753400	Weak transcription	HSMMtube	muscle
4	chr15:39748200-39753800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:39748200-39754000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:39748400-39753200	Weak transcription	K562	blood
7	chr15:39748600-39753600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:39748600-39754000	Weak transcription	NHLF	lung
9	chr15:39748800-39752400	Weak transcription	NHDF-Ad	bronchial
10	chr15:39748800-39753600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:39748800-39753600	Weak transcription	Osteobl	bone
12	chr15:39749000-39753400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:39749400-39753200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:39749400-39754000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:39749600-39752400	Weak transcription	Pancreas	Pancrea
16	chr15:39749600-39752800	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:39749600-39753000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:39749600-39753200	Weak transcription	Fetal Stomach	stomach
19	chr15:39749600-39753400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:39749600-39753400	Weak transcription	Fetal Lung	lung
21	chr15:39749600-39753400	Weak transcription	Right Atrium	heart

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