Variant report

Variant	rs3889532
Chromosome Location	chr15:39764532-39764533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:39764169-39766122	IMR90	lung:	n/a	n/a
2	MAZ	chr15:39764342-39765872	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000259269	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10459586	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520130	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070198	0.84[EUR][1000 genomes]
rs11070206	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070207	0.97[ASN][1000 genomes]
rs1158915	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158916	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158917	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854059	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855543	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11855977	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855990	0.97[ASN][1000 genomes]
rs11857970	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12148631	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1551945	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952151	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16969038	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16969104	1.00[ASN][1000 genomes]
rs4286083	1.00[ASN][1000 genomes]
rs4923830	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924362	1.00[ASN][1000 genomes]
rs5028679	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56839831	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56869025	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57248361	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58417285	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61648928	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7171584	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73393497	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025111	1.00[ASN][1000 genomes]
rs8032303	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034569	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
2	chr15:39754600-39764600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:39758200-39765200	Weak transcription	Right Atrium	heart
4	chr15:39758800-39765200	Weak transcription	HSMM	muscle
5	chr15:39759800-39765200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:39759800-39766800	Weak transcription	Lung	lung
7	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
8	chr15:39760000-39764600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:39761000-39765200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:39761200-39764600	Weak transcription	Adipose Nuclei	Adipose
11	chr15:39761200-39764600	Weak transcription	Osteobl	bone
12	chr15:39761200-39765000	Weak transcription	K562	blood
13	chr15:39761200-39765200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:39761400-39765200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:39761400-39766200	Weak transcription	HUVEC	blood vessel
16	chr15:39761800-39765400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:39762200-39764600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:39762600-39767200	Enhancers	Colon Smooth Muscle	Colon
19	chr15:39762800-39767200	Enhancers	Fetal Stomach	stomach
20	chr15:39763000-39767800	Enhancers	Fetal Lung	lung
21	chr15:39763200-39764800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:39763200-39767800	Enhancers	Fetal Muscle Leg	muscle
23	chr15:39763400-39765000	Enhancers	Fetal Kidney	kidney
24	chr15:39763400-39765400	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:39763400-39767000	Enhancers	Rectal Smooth Muscle	rectum
26	chr15:39763400-39767200	Enhancers	NHDF-Ad	bronchial
27	chr15:39763600-39764600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:39763600-39765400	Active TSS	Fetal Brain Male	brain
29	chr15:39763800-39764600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:39763800-39766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:39764000-39764800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr15:39764000-39765200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr15:39764000-39765800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:39764000-39767000	Enhancers	NHLF	lung
35	chr15:39764400-39767000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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