Variant report

Variant	rs11070455
Chromosome Location	chr15:45680943-45680944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1055395	1.00[EUR][1000 genomes]
rs1145072	1.00[EUR][1000 genomes]
rs1145073	1.00[EUR][1000 genomes]
rs1145082	1.00[EUR][1000 genomes]
rs1145092	1.00[EUR][1000 genomes]
rs1145094	1.00[EUR][1000 genomes]
rs1153850	1.00[EUR][1000 genomes]
rs1153851	1.00[EUR][1000 genomes]
rs1153856	1.00[EUR][1000 genomes]
rs1153859	1.00[EUR][1000 genomes]
rs1346265	1.00[EUR][1000 genomes]
rs1403319	1.00[EUR][1000 genomes]
rs1464558	1.00[EUR][1000 genomes]
rs1706775	1.00[EUR][1000 genomes]
rs1706782	1.00[EUR][1000 genomes]
rs1706783	1.00[EUR][1000 genomes]
rs1706784	1.00[EUR][1000 genomes]
rs1706786	1.00[EUR][1000 genomes]
rs1706788	1.00[EUR][1000 genomes]
rs1706789	1.00[EUR][1000 genomes]
rs1706790	1.00[EUR][1000 genomes]
rs1706794	1.00[EUR][1000 genomes]
rs1706795	1.00[EUR][1000 genomes]
rs1706796	1.00[EUR][1000 genomes]
rs1706797	1.00[EUR][1000 genomes]
rs1719242	1.00[EUR][1000 genomes]
rs1719249	1.00[EUR][1000 genomes]
rs1874318	1.00[EUR][1000 genomes]
rs2217121	1.00[EUR][1000 genomes]
rs2433603	1.00[EUR][1000 genomes]
rs2433604	1.00[EUR][1000 genomes]
rs2433605	1.00[EUR][1000 genomes]
rs2433606	1.00[EUR][1000 genomes]
rs2433609	1.00[EUR][1000 genomes]
rs2433610	1.00[EUR][1000 genomes]
rs2453544	1.00[EUR][1000 genomes]
rs2461704	1.00[EUR][1000 genomes]
rs2467852	1.00[EUR][1000 genomes]
rs2467855	1.00[EUR][1000 genomes]
rs2467856	1.00[EUR][1000 genomes]
rs2467857	1.00[EUR][1000 genomes]
rs2486271	1.00[EUR][1000 genomes]
rs2486289	1.00[EUR][1000 genomes]
rs2486290	1.00[EUR][1000 genomes]
rs2668740	1.00[EUR][1000 genomes]
rs2687513	1.00[EUR][1000 genomes]
rs57553327	1.00[EUR][1000 genomes]
rs7163395	1.00[EUR][1000 genomes]
rs7163751	1.00[EUR][1000 genomes]
rs7164252	1.00[EUR][1000 genomes]
rs7169175	1.00[EUR][1000 genomes]
rs7173541	1.00[EUR][1000 genomes]
rs7179186	1.00[EUR][1000 genomes]
rs7179844	1.00[EUR][1000 genomes]
rs74009622	1.00[EUR][1000 genomes]
rs8028061	1.00[EUR][1000 genomes]
rs8033329	1.00[EUR][1000 genomes]
rs8040380	1.00[EUR][1000 genomes]
rs9806260	1.00[EUR][1000 genomes]
rs9972564	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45671200-45682400	Weak transcription	Small Intestine	intestine
2	chr15:45676400-45684800	Enhancers	Fetal Intestine Large	intestine
3	chr15:45677200-45681200	Enhancers	Fetal Intestine Small	intestine
4	chr15:45678800-45683200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:45679000-45681600	Weak transcription	Placenta	Placenta
6	chr15:45679000-45681600	Weak transcription	Pancreas	Pancrea
7	chr15:45679000-45686200	Weak transcription	Left Ventricle	heart
8	chr15:45679000-45693800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:45679200-45681600	Weak transcription	Brain Anterior Caudate	brain
10	chr15:45679200-45682200	Weak transcription	Ovary	ovary
11	chr15:45679200-45682200	Weak transcription	Right Atrium	heart
12	chr15:45679400-45682000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:45679400-45688800	Enhancers	Liver	Liver
14	chr15:45679600-45681600	Weak transcription	Brain Substantia Nigra	brain
15	chr15:45679600-45682200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:45679600-45684400	Enhancers	HepG2	liver
17	chr15:45679800-45681600	Weak transcription	Brain Angular Gyrus	brain
18	chr15:45679800-45681800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:45679800-45682200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:45679800-45682200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:45679800-45682200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:45679800-45682400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:45679800-45684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:45680000-45681600	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:45680200-45684400	Weak transcription	NHEK	skin
26	chr15:45680400-45681600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:45680400-45682000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:45680800-45681800	Weak transcription	Duodenum Mucosa	Duodenum

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