Variant report

Variant	rs7163395
Chromosome Location	chr15:45640618-45640619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1055395	1.00[EUR][1000 genomes]
rs11070455	1.00[EUR][1000 genomes]
rs1145072	1.00[EUR][1000 genomes]
rs1145073	1.00[EUR][1000 genomes]
rs1145082	1.00[EUR][1000 genomes]
rs1145092	1.00[EUR][1000 genomes]
rs1145094	1.00[EUR][1000 genomes]
rs1153850	1.00[EUR][1000 genomes]
rs1153851	1.00[EUR][1000 genomes]
rs1153856	1.00[EUR][1000 genomes]
rs1153859	1.00[EUR][1000 genomes]
rs1346265	1.00[EUR][1000 genomes]
rs1403319	1.00[EUR][1000 genomes]
rs1464558	1.00[EUR][1000 genomes]
rs1706775	1.00[EUR][1000 genomes]
rs1706782	1.00[EUR][1000 genomes]
rs1706783	1.00[EUR][1000 genomes]
rs1706784	1.00[EUR][1000 genomes]
rs1706786	1.00[EUR][1000 genomes]
rs1706788	1.00[EUR][1000 genomes]
rs1706789	1.00[EUR][1000 genomes]
rs1706790	1.00[EUR][1000 genomes]
rs1706794	1.00[EUR][1000 genomes]
rs1706795	1.00[EUR][1000 genomes]
rs1706796	1.00[EUR][1000 genomes]
rs1706797	1.00[EUR][1000 genomes]
rs1719242	1.00[EUR][1000 genomes]
rs1719249	1.00[EUR][1000 genomes]
rs1874318	1.00[EUR][1000 genomes]
rs2217121	1.00[EUR][1000 genomes]
rs2433603	1.00[EUR][1000 genomes]
rs2433604	1.00[EUR][1000 genomes]
rs2433605	1.00[EUR][1000 genomes]
rs2433606	1.00[EUR][1000 genomes]
rs2433609	1.00[EUR][1000 genomes]
rs2433610	1.00[EUR][1000 genomes]
rs2453544	1.00[EUR][1000 genomes]
rs2461704	1.00[EUR][1000 genomes]
rs2467852	1.00[EUR][1000 genomes]
rs2467855	1.00[EUR][1000 genomes]
rs2467856	1.00[EUR][1000 genomes]
rs2467857	1.00[EUR][1000 genomes]
rs2486271	1.00[EUR][1000 genomes]
rs2486289	1.00[EUR][1000 genomes]
rs2486290	1.00[EUR][1000 genomes]
rs2668740	1.00[EUR][1000 genomes]
rs2687513	1.00[EUR][1000 genomes]
rs57553327	1.00[EUR][1000 genomes]
rs7163751	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164252	1.00[EUR][1000 genomes]
rs7169175	1.00[EUR][1000 genomes]
rs7173541	1.00[EUR][1000 genomes]
rs7179186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179844	1.00[EUR][1000 genomes]
rs74009622	1.00[EUR][1000 genomes]
rs8028061	1.00[EUR][1000 genomes]
rs8033329	1.00[EUR][1000 genomes]
rs8040380	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9806260	1.00[EUR][1000 genomes]
rs9972564	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45626000-45652000	Weak transcription	Brain Substantia Nigra	brain
2	chr15:45629800-45642000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:45634600-45651600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:45635200-45641400	Enhancers	HepG2	liver
5	chr15:45635600-45641400	Enhancers	Fetal Intestine Small	intestine
6	chr15:45636600-45640800	Enhancers	Liver	Liver
7	chr15:45639200-45664200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:45639600-45642000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:45639600-45661800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:45640200-45641000	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:45640200-45642000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:45640400-45640800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:45640400-45640800	Enhancers	Stomach Mucosa	stomach
14	chr15:45640400-45641000	Enhancers	Pancreas	Pancrea
15	chr15:45640400-45641200	Enhancers	Gastric	stomach
16	chr15:45640400-45641400	Enhancers	Fetal Intestine Large	intestine
17	chr15:45640400-45650000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:45640600-45647600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:45640600-45664200	Weak transcription	Rectal Mucosa Donor 31	rectum

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